Display, evaluate and edit alignments
for comparative modeling

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With MODAlign you can:

  • display target-template alignments together with sequence and structural annotations
  • evaluate the quality of alignments using various structural parameters and QMEAN
  • refine the alignments using an interactive editor
  • build 3D models and assess their quality
  • Target-template alignment input form - [Autofill it with an example]

    Autofill with a sample TT alignment Download a sample file
    MODAlign uses Modeller. A default license key is provided. We strongly encourage to use your personal Modeller key (FAQ:How to get Modeller key?) so that the developers can keep track of their users.

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    If you use this web server, please cite the following references:

  • Kosinski, J., Barbato, A., Tramontano, A. MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships (2013) Bioinformatics, 29 (7):953-4 [article]
  • Barbato A., Benkert P., Schwede T., Tramontano A. and Kosinski J. Improving your target-template alignment with MODalign. (2012) Bioinformatics 28 (7):1038-1039 [article]